Fundamentals of Sequence Analysis, 1995-1996
Problem set 9:  RNA folding.

If you get stuck, refer to the OpenVMS and GCG resources in the 
class home page.

  See the GCG documentation.

Problem group 1.  Stem-loop structures

1A.  Are there any stem/loop structures in the tet gene of pBR322 that
     have at least 16 hydrogen bonds in the stem?

Problem group 2.  RNA folding

2A.  Does the tet RNA from pBR322 have a defined secondary structure?

2B.  Does the 3' end of the Drosophila bicoid mRNA have a defined
     structure?  (gb_in:X14458, 1550-2456)