This page contains descriptions of some software that has been loaded onto
the SAF AXP machine and links any on line manuals for same.
RTFtoHTML converts RTF format to HTML format
Xmgr Very flexible X11 based plotting program
Xmgr Users Guide,
GLE Very flexible plotting program that preview
on Regis, Tektronix, or X11 devices, outputs to Postscript or HPGL.
GLE Users Guide,
AmuletCross platform GUI
CGM Draw ("CD")Portable package for drawing CGM graphics filesCD documentation
CLONEITInteractive program for designing cloning experiments
% tofasta -infile=vector_in_gcg_format.seq -out=vector.nfa
% tofasta -infile=insert_in_gcg_format.seq -out=insert.nfa
% cloneit -VEvector.fasta -INinsert.fasta
This will put you in a menu system which *will* roll off the top of the
screen (46 options), so be sure you use an emulator which will let you
scroll back up.
There are two enzyme files you might want to use:
The first is a short list of common Restriction enzymes, the latter is all
enzymes in the most recent NEB database.
The only other environmental variable you might want to change is the
symbol CLONEPRINT, which directs where your printed output goes. The
default is that it goes to the same place as the PRINT command.