Organism Databases

Table of Contents

• Databases including many organisms
• Genomic databases
• Sequence, Pattern, and Structure databases
• Single organism databases
• Many bacteria and archae
• Arabidopsis thaliana
• Caenorhabditis elegans
• Drosophila melanogaster
• Escherichia coli
• Mus musculus
• Saccharomyces cerevisiae
• Danio rerio (Zebrafish)
• Genome browsers by chromosomal position in base pairs

Genomic databases

Genome Annotation Consortium (Oak Ridge)
The Genome Channel
ARS Genome Database Resource
Celera genomics
NCBI

Sequence, Pattern, and Structure databases

Genbank (ftp site at the NCBI)
PDB (Protein Data Bank RCSB)
PIR (Protein Information Resource, also NRL_3D)
PROSITE (Database of protein families and domains)
SWISS-PROT (Annotated protein sequence database)

Many bacteria and archae
TIGR microbial database
Arabidopsis thaliana
The Arabidposis Information Resource (tair)
AGR (Arabidopsis Genome Resource)  (Nottingham)
Caenorhabditis elegans
Wormbase
C. elegans Web server
The C. elegans Genome Project (Sanger)
Drosophila melanogaster
FlyBase (Harvard)
EDGP (European Drosophila Genome Project)
BDGP (Berkeley Drosophila Genome project)
Escherichia coli
CGSC (Stocks)
E. coliGenome Project (U. Wisconsin)
Homo sapiens
Human Genome Project main page (US DOE)
Ensemble (EBI Genome site at Sanger)
NBCI Human genome page
UC Santa Cruz Human Genome Project working draft
Genome Data Base (defunct, see Genome Annotation Consortium)
Online Mendelian Inheritance in Man
Human Genome physical map from CEPH-Genethon (also available from Baylor Genome Center)
Integrated Genome Database at Moulon, France
Bodymap project (University of Tokyo)
 An STS-Based Map of the Human Genome (Whitehead Institute)
Visible Human Project and NPAC viewer
Mus musculus
Mouse Genome Database list (nervenet)
Jackson Laboratory pages
TBASE (The Transgenic/Targeted Mutation Database)
Mouse Genome Informatics
Saccharomyces cerevisiae
SGD (Saccharomyces Genome Project) (Stanford)
YPD (Yeast Proteome Database) (Proteome, Inc)
Yeast Genome (MIPS)
Danio rerio (Zebrafish)
The Fish Net (U. Oregon)