Biology Web Services

Table of Contents

• Molecular Biology
• Sites offering many services
• Commercial Bioinformatics sites
• Sites with links to many services and resources
• Structural Biology

Sites offering many services

NCBI:  Pubmed, Entrez, Blast, BankIt, Databases,...
BCM:  Search Launcher, Gene Finder, Secondary Structure Prediction, ...
ABIM (Atelier BioInformatique)
CGG:  Nucleotide Seq. Analysis, Protein Seq. Analysis , 3-D, Infogen
CBRG: (Computational Biochemistry Research Group)
EBI:  (European Bioinformatics Institute)
ExPASy: Assorted protein and peptide tools

Commercial Bioinformatics sites

(software for sale, consulting, or on line service for a fee)

Accelrys
Bionavigator
Celera (Access to Drosophila database is free)
Curagen
DoubleTwist (Defunct)
Gene Logic
InforMac
GCG (bought by Accelrys)
Integrated Genomics
LabOnWeb
Lion Biosciences AG
Mosaic Bioinformatics (Defunct?)
Oxford Molecular (bought by Accelrys)
Timelogic

Sites with links to many services and resources

Amos' WWW links
Bio-wURLd
BioView
Bio Netbook
Pedro's BioMolecular Research Tools (ancient) page

Atlas of protein sidechain conformations
Atlas of Side-Chain and Main-Chain hydrogen bonding
BioMolecular Engineering Research Center tools (Boston University)
Crystallography
DALI - query with a structure, search PDB database for similar 3D structures
Hotlinks to protein-structure related databases (DEFUNCT)
NDB database
PDB browser
PDB FTP site
Structural Classification of Proteins (SCOP at MRC)
SWISS-Model,An Automated Knowledge-based Protein Modelling Serve
Molecules R US (select and display models of PDB entries)
NIH molecular modeling home page